Right-Sizing the Sequencing
January 24, 2023
So... I appears that we cannot just make a *de novo* assembly with **all** the sequences.
General Content
The following are general content postings that I use for reference materials in teaching, personal, and research activities.
Demultiplexing
January 16, 2023
If you have to take all the DNA, randomly chop it up, give unique barcodes to each individual then you will eventually have to try to figure out how to put it all back together. I used `process_radtags` since it was easiest.
Right-Sizing the Sequencing
January 12, 2023
Biologists are, characteristically, rather crappy programmers. As such, there is a lot of cobbling that is done to accomplish some tasks. This is an example of that cobbling for creating *de novo* genomic assemblies for generic SNP calling.
New Year, New Setup
January 5, 2023
At the turn of the year, it is common to try to re-evaluate how things have worked out during the previous circle of our star and see if we can improve on it. For 2023, one of my core goals is to simplify the workflows I use in my daily life. Here is how I did it.
