R

GStudio Package Update

The latest update to the population genetic analysis is the R package gstudio. These updates mainly dealt with workarounds for missing data instead of just returning NA.

Rodney Dyer

• 1 min read
A stylized picture of developing a package from raw materials to shipping.
Raw production of analytical tools is a multistage process...

The latest update to the gstudio package was pushed to GitHub today. This is an R package for the spatial analysis of population genetic data. To install these updates directly, fire up R and

remotes::install_github("dyerlab/popgraph")
remotes::install_github("dyerlab/gstudio")

If you would like to contribute to this package or have any questions regarding its construction, use, or additional functionality, please contact Rodney J. Dyer

gstudio 1.7 - 20250403

  • [FIX] Added locus-wise analysis and self-trimming for small population sizes for heterozygosities
  • [FIX] Dropped missing data from summary statistics and added a warning to alert the user rather than just give NA and let them do the sorting.
  • [FIX] Reimplemented permutation for Fst.
  • [FIX] Removed raster package references from the repository.